Incorrect server situation

[PaREF]

I was given this scenario that happened during a junior high girls match and asked if the correct ruling was applied;

NFHS rules, first server of the match goes on a run and receiving team can't pass. receiving team coach calls timeout at 0-4. Play continues and receiving team coach calls timeout at 0-9. During timeout, scorekeeper tells R2 that it is the wrong server. R2 checks (don't know why he/she didn't catch it when checking lineups) and verifies that it is the incorrect server.

After removing all nine points, awarding receiving team a point, and correcting the serving team's lineup, the receiving team's coach asks R2 if he/she gets back the timeouts used while the incorrect server was serving. R2 indicates that the timeouts were used and can't be negated.

I know that I should know this but was the R2 correct? I'm thinking about this while watching a baseball game on television and don't have my books handy. I know that I'll forget if I don't post this now.