Foul during shot

[so cal lurker]

From the same game as the shot clock scenario (a varsity HS tournament game, with non-exceptional officiating from my parent view in the stands).

White is in the bonus. Big men are pushing and slapping a bit. Red shoots a three. Whistle blows, foul on red center off the ball. Refs count the basket and give the ball to white.

Isn’t that wrong. Doesn’t it have to either be a team control foul that wipes the basket (foul before the shot), or not a team control foul and they shoot the bonus feee throws (while shot in the air before it passes through)?