I agree with tjones1, the BR is out on appeal. Even though the BR was awarded 2nd base, it is the BR's responsibility to legally gain the awarded bases. BR is out on proper appeal. BR has the opportunity, once the ball is declared dead to touch 1b then proceed to the awarded second base.
To put another perspective on it, if BR hits a home run (s)he is awarded four bases, by rule. If (s)he misses 1b on his/her way around, (s)he can be called out on proper appeal. Same concept as what you are asking.
-Josh
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