scoring question

[hunter57]

how do you score the following: in a high school game, the coach crossed up the players numbers on the 5th & 6th batters on the score card, correct names, just wrong jersey numbers. the 5 hole batter hit a single, opposing coach protested an out of order batter. umpire called third out and inning was over. who gets the out in this situation, the 5 hole batter or the 6 hole batter. fyi---in the next inning the 6 hole batter came up first, and for the rest of the game they kept the batting order as submitted, if appears that the umpire just let the players numbers be changed to the correct individual. how is this scored???