From what I understand, Cleveland is playing this game under protest. Here's the lead from the AP story and a link (that I hope works) from the ESPN site.
CLEVELAND (AP) -- A bizarre set of circumstances in Saturday night's game between the Baltimore Orioles and Cleveland Indians featured a run that was disallowed in the third inning apparently being counted three innings later.
http://sports.espn.go.com/mlb/recap?gameId=270428105