need help on NCAA new rule for runner leaving early

[shipwreck]

Please help me get this through my thick skull. Under current NCAA rules, here is the situation. Bases loaded, an illegal pitch happens first, then the runner on first leaves early. Batter gets an in the park home run. The rule book says signal delayed dead ball, let play continue, get with your partners, figure out which happened first, give the opposing coach the option of the play or enforcement of the rule. Then enforce the second violation. When all the smoke clears, how many runs would score? Also, if there are two outs, wouldn't that change the run output? The illegal pitch happened first, so the OC would take the result of the play, 4 runs score. Then you would go to the DC and ask what they want to do. This is where I get confused on how to sort this out. Please help.
Dave